Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015795341.1_cds_XP_016443524.1_3784
CDS Infomation

[gene=LOC107768864] [db_xref=GeneID:107768864] [protein=probable E3 ubiquitin-protein ligase HIP1] [protein_id=XP_016443524.1] [location=complement(join(32085..32216,32327..32470,32550..32648,33968..34018,34743..36512))] [gbkey=CDS]
Sequence

ATGCAAGGGCAACGGAGTACCATCGGTTCCCTGCCAGAAACTTTGAGTTTCAATCATGGT
TCAACATCGAGTGATGGCAGTATAGATCAACAGATTTGTTGGAATAATTTGCGGAATCCT
GCACAAAGTCGGCTACCAGATTATATGGTACCTTCTAATGAGACAAACATACAATTTCTT
AGTCCTGTAAACCAAGAAAGACAGAATATAATTAGCTGGAATTTAGGAGAATCCAGCTCC
TCCGGTACACAAAATAATGTTAGTCGGAGCGAACGTAAAACAGATCATGGATGGTCATCT
GCAATTAGTGCCGGTCCTGGGCCTTCTCACCTCTCTGCTGAACAGCAATATGTGTCTACC
AACATTCTTTCATTGAGTGATGTTGAAGTAAATTTGAACAACCAGATAGCTAACCACACT
TTGTTTTCTCAAGGCTCTACTTCTAGCACTGTTCCTCATGATCTAAATAGAAGTTCTGGA
CTTGAGGGGAATGATGACGATGAAGATGAAGATGATGATGATGACTGCCAAGTGATGGAG
TGCACCCCAGCATTCACATCTAATGCACCAGGAAAAGAACGGATGTCAACCGTGAATACT
TCTTCCAACCCTTTTGCTGGGCCTTCTGCTACTAGTGGATTTCTGATGGATGAAATTGAT
GGCAGGCCAGGCTGTTCATTGGATGGTCGAAGAATGGCTTGTAAGAGAAAAGCACTTGAA
GGACATCTAGGGCAATCTTCAGGAAGCGGAAGTTCAAATTATCTTCCATGCGCAGAAAAC
AGCTTATGGCGTTCACTACCTACTCCAAATAATATGACTATAGGTGCGAGTATCCCTCCA
CCAACAGAAAGTAGCAGAAACATCAATTTGTCGGAGCAGGTGAATCCAAGACTTGGGCTC
ACCGTGGGTGGAGCTACTACGGAAAGTCCTGTTGCATTGCCTGCTTCAAGAAGTGCAGAA
AGTTTCAGAAGAAATTTCAGGCTGAGGATCAATGGCTCTCATCAGCAAGCTTCTATTCCT
ACTAATCTGTTTCGTACTGCGGGTAATGATGGAAATGTTAGCATGCCATCTGAACGGGAT
TCATCGAGGCTGCTTCGTAATGAATCCTTGGATTTGAGGTCTGTGTCTGCTGCAGATAAT
GGAATTCCTCGAGGCCAGCCTGTAGCGGTGCAGGTTCCGTCTCTGCGGCGAAGTGCACAG
AGGTGGGATTTATCATCAAGCTCAAGAGCTGGCAGTTCATCAAGTTTTTCTGTTTTTGGG
GAGAGAGATTCTGCAGCATATGAAGAACCAAGCTCAAGAAGTGTTCCCAGGAACATTTCA
CAGCATCCAATGTTCATACCCGCTACTGACTTGAGAAATTTGAACCAAAATCCTGCCAAC
TGGAGTTTGACTGGAGGAAATATTGCTGTTGCTGGAAATGTTGCATCTACTTCTCGAGGT
AGTCCCAGCTCAGGAGCTCCTTCCGCTTCCCCTAGTTGGGTGCAACACAGAAATCCTTCT
CAACATCCCAGGAGACTCTCAGAATATGTTCGTAGATCTTTGTTGTCTTCAGCTGGCAGT
GAACCTGGAGGTCAGAATGGTAACACCCCACCACCTTTGGGTTCTGCTGCCTCACAGGAG
ATGGCACTTTCTGGTCGTCATGGGCATCGTCCGTCAAGTTCAAGGTCGGCCTTGATGTTG
GAGAGACAACTCGATGGCGCTGTTGGAGTTCCATATTCTTGGAGGTCTTTGGCTGCTGCC
AGTGAAGGAAGGAGCAGGCTTGTTTCCGAGATTCGCAATGTATTGGATCTTATGCGCAGG
GGAGAGGCCTTAAGATTCGAGGATGTTATGATCCTCGATCAGTCGGTCTTCTTCGGAATG
GCGGATATTCATGATCGCCATCGGGATATGCGGCTTGATGTTGATAACATGTCATATGAG
GAATTACTTGCACTGGAGGAGCGCATTGGGAACGTCTGCACTGGGCTTAGTGAAGAAACC
ATTTTGAATCGTCTGAAGCAACGCAAGTATGTATGCATTAAAACAGAAGAACCCGTGGAT
GCTGAGCCATGCTGTGTTTGTCAGGAAGAATATAAGGATGGTGAGGATCTTGGGAAACTG
GATTGCGGCCATGATTTTCATACCGGCTGCATTAAACAGTGGCTCATGCAGAAGAATTTG
TGCCCGATTTGCAAAACAACAGGGCTGAAAACCTGA

Peptide Sequence

PEP ID

XP_016443524.1
PEP Infomation

PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana tabacum]
Sequence

MQGQRSTIGSLPETLSFNHGSTSSDGSIDQQICWNNLRNPAQSRLPDYMVPSNETNIQFL
SPVNQERQNIISWNLGESSSSGTQNNVSRSERKTDHGWSSAISAGPGPSHLSAEQQYVST
NILSLSDVEVNLNNQIANHTLFSQGSTSSTVPHDLNRSSGLEGNDDDEDEDDDDDCQVME
CTPAFTSNAPGKERMSTVNTSSNPFAGPSATSGFLMDEIDGRPGCSLDGRRMACKRKALE
GHLGQSSGSGSSNYLPCAENSLWRSLPTPNNMTIGASIPPPTESSRNINLSEQVNPRLGL
TVGGATTESPVALPASRSAESFRRNFRLRINGSHQQASIPTNLFRTAGNDGNVSMPSERD
SSRLLRNESLDLRSVSAADNGIPRGQPVAVQVPSLRRSAQRWDLSSSSRAGSSSSFSVFG
ERDSAAYEEPSSRSVPRNISQHPMFIPATDLRNLNQNPANWSLTGGNIAVAGNVASTSRG
SPSSGAPSASPSWVQHRNPSQHPRRLSEYVRRSLLSSAGSEPGGQNGNTPPPLGSAASQE
MALSGRHGHRPSSSRSALMLERQLDGAVGVPYSWRSLAAASEGRSRLVSEIRNVLDLMRR
GEALRFEDVMILDQSVFFGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVCTGLSEET
ILNRLKQRKYVCIKTEEPVDAEPCCVCQEEYKDGEDLGKLDCGHDFHTGCIKQWLMQKNL
CPICKTTGLKT

Transcript Sequence

Gene sequence data has not been registered.